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There are 50 Missile Expansions in the game, including the Missile launcher itself. If you get all of them you missile capacity will be 250.

Tallon Overworld

  • Transport Tunnel B (1)
  • Landing Site (1)
  • Overgrown Cavern (1)
  • Frigate Crash Site (1)
  • Biohazard Containment (1)
  • Life Grove Tunnel (1)
  • Great Tree Chamber (1)
  • Root Cave (1)
  • Arbor Chamber (1)

Subtotal: 9

Chozo Ruins

  • Hive Totem (1) – Missile Launcher
  • Ruined Gallery (2)
  • Burn Dome (1)
  • Watery Hall Access (1)
  • Dynamo (2)
  • Vault (1)
  • Ruined Nursery (1)
  • Main Plaza (3)
  • Ruined Shrine (2)
  • Ruined Fountain (1)
  • Gathering Hall (1)
  • Crossway (1)
  • Furnace (1)
  • Watery Hall (1)
  • Training Chamber Access (1)

Subtotal: 20

Magmoor Caverns

  • Storage Cavern (1)
  • Fiery Shores (1)
  • Triclops Pit (1)

Subtotal: 3

Phendrana Drifts

  • Research Lab Aether (1)
  • Research Lab Hydra (1)
  • Ice Ruins East (2)
  • Phendrana Shorelines (2)
  • Quarantine Monitor (1)
  • Frost Cave (1)
  • Gravity Chamber (1)

Subtotal: 9

Phazon Mines

  • Main Quarry (1)
  • Elite Research (1)
  • Elite Control Access (1)
  • Security Access A (1)
  • Metroid Quarantine A (1)
  • Fungal Hall Access (1)
  • Fungal Hall B (1)
  • Metroid Quarantine B (1)
  • Phazon Processing Center (1)

Subtotal: 9