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This page needs to be split into subpages. Aren't bosses only encountered at one point in the guide?

Please add some links to the Table of Contents and split this page to separate pages, then remove this template.

Every boss has 40 health points, except for one of them.

Sprite Name Location HP Notes
IoT Boss Castoth.png
Castoth Larai Cliff 40 First attack both hands so they disappear temporarily. Then wait until his eyes flash: that is when he becomes vulnerable. Attack him until he becomes invulnerable, then hide behind him so his laser doesn't reach you. Repeat.
IoT Boss Viper.png
Viper Sky Garden 40 Just attack him with Freedan when he is in your reach and avoid his feather.
IoT Boss Vampir Valor.pngIoT Boss Vampirella Gitane.png Vampir Valor & Vampirella Gitane Mu 40 Change yourself in Freedan for this battle, as this will be a great help since there is a time limit of 140 seconds. Erik is held hostage with a time bomb. You have to defeat the two vampires in that time or Erik will die. First concentrate on one and defeat him/her, then defeat the other to win the battle. Seems they are called Jack and Silvana in the US version.
IoT Boss Sand Fanger.png
Sand Fanger Great Wall 40 He isn't that hard, just annoying. You need to be patient and attack when he comes out of sand.
IoT Boss Mummy Queen.png
Mummy Queen Pyramid 40 This is your first battle as Shadow, so make use of Aura soon after you attack the boss, then avoid the ghosts until the Queen is assembled again. Once she loses 20 HP she will change tactics: her ghosts will will rotate in a circle around the battlefield instead of spread out. When one of the ghost is stabilized attack it to make the Queen appear again.
Dark bosses in the Tower of Babel
IoT Boss Dark Castoth.png
Dark Castoth Tower of Babel 40 The same old enemy with more attacks, so beware of Fire, Two-Crystal, etc. Luckily you're fighting as Shadow and Aura is really useful.
IoT Boss Dark Viper.png
Dark Viper Tower of Babel 40 Same tactics as with the old Viper.
IoT Boss Dark Vampir Valor.pngIoT Boss Dark Vampirella Gitane.png Dark Vampir Valor & Dark Vampirella Gitane Tower of Babel 40 This time there is no time limit and you're fighting as Shadow so it should be much easier.
IoT Boss Dark Sand Fanger.png
Dark Sand Fanger Tower of Babel 40 Just be patient and attack when possible.
IoT Boss Dark Mummy Queen.png
Dark Mummy Queen Tower of Babel 40 The tactic is the same here.
Secret boss
IoT Boss Solid Arm.png
Solid Arm Gem Mansion 40 You probably know this Boss from Soul Blazer, where he is the first Boss. Anyway he is a secret Boss and completly optional. You need to collect all 50 Red Jewels and bring it to Jeweller to get to Gem Mansion.

Solid Arm is quite tough as you will only make 1 damage to him. Method 1 is to hack him on the belt and then run away to the fartest belt and attack him again. Method 2 is to use Psycho Slider to slide behind him and attack him over ander over again. Method 3 is to use the Jump Attack (Forward + A Button).
Final bosses
IoT Boss Chaos Comet.png
Chaos Comet Comet 20 This is the only boss who doesn't have full HP slot. He is quite easy to defeat: you just need to stand and fire rapidly with Firebird, then avoid the Meteorrain with Aura.
IoT Boss Dark Gaia.png
Dark Gaia Comet 40 Stand directly under the head as that is the only weak point. Attack it with Firebird. The Bubble can also be destroyed with it, but evade the two Green Orbs with the Aura.