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Sorting the table by Location, you can see at a glance how early in the game any Secret Disk can be found. Stages accessed from the same selection screen have the same number before the stage name.
| Number | Type | Contents | Location |
|---|---|---|---|
| 001 | Head Chip | Auto-Charge | 3 - Old Residential |
| 002 | Head Chip | Auto-Recover | 5 - Forest of Anatre |
| 003 | Head Chip | Quick-Charge | 7 - Snowy Plains |
| 004 | Foot Chip | Frog | 7 - Energy Facility |
| 005 | Foot Chip | Splash Jump | 3 - Oceanic Highway Ruins |
| 006 | Foot Chip | Ultima Foot | 8 - Sub Arcadia |
| 007 | Data File | File A | 1 - Derelict Spacecraft |
| 008 | Data File | File B | 3 - Aegis Volcano Base |
| 009 | Data File | File C | 3 - Oceanic Highway Ruins |
| 010 | Data File | File D | 7 - Sunken Library |
| 011 | Data File | File E | 9 - Final Stage |
| 012 | Data File | File F | 3 - Weapon Repairing Factory |
| 013 | Data File | File G | 3 - Old Residential |
| 014 | Data File | File H | 5 - Forest of Anatre |
| 015 | Data File | File I | 5 - Frontline Ice Base |
| 016 | Data File | File J | 7 - Sunken Library |
| 017 | Data File | File K | 7 - Sunken Library |
| 018 | Data File | File L | 7 - Sunken Library |
| 019 | Data File | File M | 9 - Final Stage |
| 020 | Data File | File N | 9 - Final Stage |
| 021 | Cyber-Elf |  Martina
|
4 - Missile Factory |
| 022 | Cyber-Elf | Milvy
|
5 - Twilight Desert |
| 023 | Cyber-Elf | Elphy
|
5 - Base (during 2nd set of missions) |
| 024 | Cyber-Elf | Sylphy
|
1 - Derelict Spacecraft |
| 025 | Cyber-Elf | Rilphy
|
7 - Snowy Plains |
| 026 | Cyber-Elf |  Artan
|
3 - Aegis Volcano Base |
| 027 | Cyber-Elf | Zictan
|
7 - Giant Elevator |
| 028 | Cyber-Elf | Mott
|
3 - Old Residential |
| 029 | Cyber-Elf | Dott
|
7 - Snowy Plains |
| 030 | Cyber-Elf | Curiph
|
4 - Missile Factory |
| 031 | Cyber-Elf | Luriph
|
5 - Twilight Desert |
| 032 | Cyber-Elf | Suriph
|
5 - Frontline Ice Base |
| 033 | Cyber-Elf | Tiriph
|
7 - Sunken Library |
| 034 | Cyber-Elf | Yuriph
|
6 - Area X-2 |
| 035 | Cyber-Elf | Beriph
|
5 - Frontline Ice Base |
| 036 | Cyber-Elf | Wiliph
|
8 - Sub Arcadia |
| 037 | Cyber-Elf | Cyliph
|
1 - Derelict Spacecraft |
| 038 | Cyber-Elf | Snoq
|
8 - Sub Arcadia |
| 039 | Cyber-Elf | Mathiq
|
3 - Old Residential |
| 040 | Cyber-Elf | Mylaq
|
5 - Forest of Anatre |
| 041 | Cyber-Elf | Ajiq
|
7 - Giant Elevator |
| 042 | Cyber-Elf | Dobuq
|
6 - Area X-2 |
| 043 | Cyber-Elf | Mulaq
|
7 - Sunken Library |
| 044 | Cyber-Elf |  Mailla
|
8 - Base (after 3rd set of missions) |
| 045 | Cyber-Elf | Miulla
|
7 - Giant Elevator |
| 046 | Cyber-Elf | Cloppe
|
7 - Snowy Plains |
| 047 | Cyber-Elf | Sloppe
|
3 - Aegis Volcano Base |
| 048 | Cyber-Elf | Putite
|
3 - Old Residential |
| 049 | Cyber-Elf | Balette
|
3 - Oceanic Highway Ruins |
| 050 | Cyber-Elf | Maya
|
1 - Derelict Spacecraft |
| 051 | Cyber-Elf | Kwappa
|
7 - Sunken Library |
| 052 | Cyber-Elf | Gambul
|
3 - Weapon Repairing Factory |
| 053 | Cyber-Elf | Biraid
|
3 - Weapon Repairing Factory |
| 054 | Cyber-Elf | Birleaf
|
7 - Giant Elevator |
| 055 | Cyber-Elf | Pitapah
|
4 - Missile Factory |
| 056 | Cyber-Elf | Pitapuh
|
7 - Energy Facility |
| 057 | Cyber-Elf | Beetack
|
4 - Missile Factory |
| 058 | Cyber-Elf | Beenipe
|
3 - Base (before clearing 1st set of missions) |
| 059 | Cyber-Elf | Archim
|
3 - Oceanic Highway Ruins |
| 060 | Cyber-Elf | Archil
|
7 - Snowy Plains |
| 061 | Cyber-Elf | Byse
|
6 - Area X-2 |
| 062 | Cyber-Elf | Dylphina
|
6 - Area X-2 |
| 063 | Cyber-Elf | Lizetus
|
5 - Forest of Anatre |
| 064 | Cyber-Elf | Cottus
|
7 - Energy Facility |
| 065 | Cyber-Elf | Shuthas
|
5 - Twilight Desert |
| 066 | Cyber-Elf | Malthas
|
5 - Frontline Ice Base |
| 067 | Cyber-Elf | Ilethas
|
3 - Old Residential |
| 068 | Cyber-Elf | Enethas
|
5 - Frontline Ice Base |
| 069 | Cyber-Elf | Busras
|
6 - Area X-2 |
| 070 | Cyber-Elf | Sabras
|
6 - Area X-2 |
| 071 | Cyber-Elf | Roderas
|
5 - Forest of Anatre |
| 072 | Cyber-Elf | Boomeras
|
3 - Aegis Volcano Base |
| 073 | Cyber-Elf | Clokkle
|
3 - Aegis Volcano Base |
| 074 | Cyber-Elf | Metoras
|
3 - Old Residential |
| 075 | Cyber-Elf | Metorika
|
3 - Oceanic Highway Ruins |
| 076 | Cyber-Elf | Metorph
|
5 - Forest of Anatre |
| 077 | Cyber-Elf | Metella
|
6 - Area X-2 |
| 078 | Cyber-Elf | Meterom
|
7 - Energy Facility |
| 079 | Cyber-Elf | Kynite
|
3 - Oceanic Highway Ruins |
| 080 | Cyber-Elf | Surnite
|
7 - Giant Elevator |
| 081 | Cyber-Elf | Tenite
|
8 - Sub Arcadia |
| 082 | Cyber-Elf | Stopalla
|
7 - Energy Facility |
| 083 | Cyber-Elf | Stopina
|
8 - Sub Arcadia |
| 084 | Cyber-Elf | Stopule
|
3 - Weapon Repairing Factory |
| 085 | Cyber-Elf | Stopeta
|
5 - Twilight Desert |
| 086 | Cyber-Elf | Stoposa
|
7 - Snowy Plains |
| 087 | Cyber-Elf | Hanmarga
|
8 - Sub Arcadia |
| 088 | Cyber-Elf | Hanmarji
|
7 - Giant Elevator |
| 089 | Cyber-Elf | Hanmarbo
|
5 - Twilight Desert |
| 090 | Cyber-Elf | Aina
|
4 - Missile Factory |
| 091 | Cyber-Elf | Acooi
|
5 - Twilight Desert |
| 092 | Cyber-Elf | Achoon
|
3 - Base (before clearing 1st set of missions) |
| 093 | Cyber-Elf | Anater
|
3 - Weapon Repairing Factory |
| 094 | Cyber-Elf | Awarne
|
7 - Sunken Library |
| 095 | E-Crystals | 80 E-Crystals | 7 - Energy Facility |
| 096 | E-Crystals | 100 E-Crystals | 7 - Sunken Library |
| 097 | E-Crystals | 200 E-Crystals | 9 - Final Stage |
| 098 | E-Crystals | 150 E-Crystals | 4 - Missile Factory |
| 099 | E-Crystals | 40 E-Crystals | 2 - Resistance Base |
| 100 | E-Crystals | 100 E-Crystals | 3 - Weapon Repairing Factory |
| 101 | E-Crystals | 100 E-Crystals | 1 - Derelict Spacecraft |
| 102 | E-Crystals | 50 E-Crystals | 3 - Aegis Volcano Base |
| 103 | E-Crystals | 80 E-Crystals | 7 - Snowy Plains |
| 104 | E-Crystals | 100 E-Crystals | 3 - Weapon Repairing Factory |
| 105 | E-Crystals | 100 E-Crystals | 5 - Twilight Desert |
| 106 | E-Crystals | 40 E-Crystals | 2 - Resistance Base |
| 107 | E-Crystals | 500 E-Crystals | 5 - Base (during 2nd set of missions) |
| 108 | E-Crystals | 100 E-Crystals | 5 - Forest of Anatre |
| 109 | E-Crystals | 100 E-Crystals | 5 - Frontline Ice Base |
| 110 | E-Crystals | 100 E-Crystals | 6 - Area X-2 |
| 111 | Boss File | Omega | 1 - Derelict Spacecraft |
| 112 | Boss File | Deathtanz Mantisk | 3 - Old Residential |
| 113 | Boss File | Childre Inarabitta | 3 - Oceanic Highway Ruins |
| 114 | Boss File | Blazin' Flizard | 3 - Aegis Volcano Base |
| 115 | Boss File | Hellbat Schilt | 3 - Weapon Repairing Factory |
| 116 | Boss File | Crea | 5 - Base (during 2nd set of missions) |
| 117 | Boss File | Prea | 4 - Missile Factory |
| 118 | Boss File | Anubis Necromancess V | 5 - Twilight Desert |
| 119 | Boss File | Hanumachine R | 5 - Forest of Anatre |
| 120 | Boss File | Blizzack Stagroff R | 5 - Frontline Ice Base |
| 121 | Boss File | Copy X Mark II | 6 - Area X-2 |
| 122 | Boss File | Tretista Kelverian | 7 - Giant Elevator |
| 123 | Boss File | Glacier Le Cactank | 7 - Snowy Plains |
| 124 | Boss File | Cubit Foxtar | 7 - Energy Facility |
| 125 | Boss File | Volteel Biblio | 7 - Sunken Library |
| 126 | Enemy File | Pantheon Hunter | 9 - Final Stage |
| 127 | Enemy File | Pantheon Guardian | 4 - Missile Factory |
| 128 | Enemy File | Pantheon Aqua | 5 - Frontline Ice Base |
| 129 | Enemy File | Pantheon Fist | 7 - Giant Elevator |
| 130 | Enemy File | Pantheon Base | 7 - Snowy Plains |
| 131 | Enemy File | Deathlock | 3 - Weapon Repairing Factory |
| 132 | Enemy File | Gyro Cannon | 5 - Frontline Ice Base |
| 133 | Enemy File | Grand Cannon | 1 - Derelict Spacecraft |
| 134 | Enemy File | Tile Cannon | 5 - Forest of Anatre |
| 135 | Enemy File | Pillar Cannon | 3 - Old Residential |
| 136 | Enemy File | Heavy Cannon | 5 - Frontline Ice Base |
| 137 | Enemy File | Capsule Cannon | 6 - Area X-2 |
| 138 | Enemy File | Generator Cannon | 4 - Missile Factory |
| 139 | Enemy File | Eye Cannon | 4 - Missile Factory |
| 140 | Enemy File | Shrimpolin | 1 - Derelict Spacecraft |
| 141 | Enemy File | Volcaire | 3 - Aegis Volcano Base |
| 142 | Enemy File | Claveker | 8 - Sub Arcadia |
| 143 | Enemy File | Petatria | 8 - Sub Arcadia |
| 144 | Enemy File | Shotloid | 7 - Giant Elevator |
| 145 | Enemy File | Seimeran | 3 - Old Residential |
| 146 | Enemy File | Lamplort | 3 - Aegis Volcano Base |
| 147 | Enemy File | Lemmingles | 3 - Weapon Repairing Factory |
| 148 | Enemy File | Cattatank | 7 - Giant Elevator |
| 149 | Enemy File | Top Gabyoall | 7 - Energy Facility |
| 150 | Enemy File | Snakecord | 7 - Energy Facility |
| 151 | Enemy File | Gallisni | 9 - Final Stage |
| 152 | Enemy File | Crossbyne | 3 - Aegis Volcano Base |
| 153 | Enemy File | Flopper | 5 - Twilight Desert |
| 154 | Enemy File | PurpleNerple | 5 - Twilight Desert |
| 155 | Enemy File | Mothjiro | 7 - Energy Facility |
| 156 | Enemy File | Batring | 1 - Derelict Spacecraft |
| 157 | Enemy File | Mellnet | 5 - Forest of Anatre |
| 158 | Enemy File | Shotcounter | 1 - Derelict Spacecraft |
| 159 | Enemy File | Sharkseal X | 3 - Oceanic Highway Ruins |
| 160 | Enemy File | Shelluno | 3 - Oceanic Highway Ruins |
| 161 | Enemy File | Icebon | 3 - Oceanic Highway Ruins |
| 162 | Enemy File | Shellcrawler | 7 - Snowy Plains |
| 163 | Enemy File | Cannonhopper | 8 - Sub Arcadia |
| 164 | Character File | Weil | 9 - Final Stage |
| 165 | Character File | Ciel | 2 - Resistance Base |
| 166 | Character File | Cerveau | 2 - Resistance Base |
| 167 | Character File | Andrew | 2 - Resistance Base |
| 168 | Character File | Alouette | 2 - Resistance Base |
| 169 | Character File | Hibou | 5 - Base (during 2nd set of missions) |
| 170 | Character File | Rocinolle | 2 - Resistance Base |
| 171 | Character File | Perroquiet | 2 - Resistance Base |
| 172 | Character File | Autruche | 2 - Resistance Base |
| 173 | Character File | Hirondelle | 2 - Resistance Base |
| 174 | Character File | Doigt | 2 - Resistance Base |
| 175 | Character File | Menart | 2 - Resistance Base |
| 176 | Character File | Pic | 2 - Resistance Base |
| 177 | Character File | Harpuia | 9 - Final Stage |
| 178 | Character File | Fefnir | 9 - Final Stage |
| 179 | Character File | Leviathan | 9 - Final Stage |
| 180 | Character File | Phantom | 8 - Sub Arcadia |
| Sub-Tank | Sub-Tank | 3 - Old Residential | |
| Sub-Tank | Sub-Tank | 5 - Forest of Anatre |